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What Can You Do With a Menagerie of Mammal Genomes?

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What Can You Do With a Menagerie of Mammal Genomes?

To study extra about people, a big worldwide staff of scientists spent years monitoring down a number of the strangest creatures on Earth. They camped out on an Arctic ice floe to gather DNA from the one-tusked narwhal, netted a tiny bumblebee bat in a cave-rich area of Southeast Asia and ventured behind the scenes at a Caribbean zoo to attract blood from the slender-snouted solenondon, one of many world’s few venomous mammals.

Researchers in contrast the genomes of those mammals with these of a various assortment of others, together with an aardvark, a meerkat, a star-nosed mole and a human. In doing so, they have been capable of determine stretches of DNA which have barely modified over eons of mammalian evolution and are thus more likely to be important to human well being and functioning.

The genetic database they assembled consists of the entire genomes of 240 species, overlaying greater than 80 % of the planet’s mammalian households (and together with people). It may assist scientists reply all kinds of questions on different animals, resembling when and the way they developed and the organic foundation for a few of their uncommon skills.

“What amazingly cool issues can these species try this people can’t do?” mentioned Elinor Karlsson, a geneticist at UMass Chan Medical Faculty and the Broad Institute and a co-leader of what’s referred to as the Zoonomia Venture. “We at all times like to think about people as being essentially the most particular species. But it surely seems that we’re actually fairly boring in some ways.”

The Zoonomia information set has limitations. It comprises only one genome per species (aside from the home canine, which was sequenced twice), and 1000’s of mammals are lacking.

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However in a brand new bundle of papers, revealed in Science on Thursday, the Zoonomia staff showcased the ability of this type of multispecies information. And it’s just the start.

“Sequencing a number of genomes will not be trivial,” mentioned Michael G. Campana, a computational genomics scientist on the Smithsonian’s Nationwide Zoo and Conservation Biology Institute, who was not a part of the challenge. “What’s actually necessary is definitely making use of those information.”

Listed here are a number of the issues that Zoonomia scientists are already doing with it:

To search for the underpinnings of remarkable animal skills, the scientists sought genetic sequences that had developed unusually rapidly in species that shared a sure trait, resembling the power to hibernate.

In a single evaluation, the researchers centered on deep hibernators, such because the fat-tailed dwarf lemur and the better mouse-eared bat, which may preserve low physique temperatures for days or even weeks at a time. The researchers discovered proof of “accelerated evolution” in a wide range of genes, together with one that’s identified to assist shield cells from temperature-related stress and one other that inhibits a mobile pathway associated to getting older.

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“Numerous hibernating species even have distinctive longevity,” Dr. Karlsson mentioned, main her to surprise: Do the adjustments in that gene contribute to their lengthy lives?

The researchers additionally explored the mammalian sense of odor. Animals have a big assortment of various olfactory receptors, every able to binding to sure odor-causing molecules; species with extra olfactory receptor genes typically have keener senses of odor.

When the Zoonomia staff tallied the variety of these genes in every species, the African savanna elephant took the highest spot, with 4,199. The nine-banded armadillo and Hoffmann’s two-toed sloth adopted, whereas the Central American agouti got here in fourth.

The agouti “seems to have top-of-the-line olfactory repertoires of any mammal, for completely unknown causes,” Dr. Karlsson mentioned. “It’s a reminder of how a lot variety there may be on the market that we don’t know something about.” (Canines, she famous, didn’t show to be “significantly particular” on this regard.)

Then again, cetaceans — a gaggle that features dolphins and whales — have a notably small variety of olfactory receptor genes, which is sensible given their watery habitats. “They impart in different methods,” mentioned Kerstin Lindblad-Toh, a geneticist on the Broad Institute and Uppsala College and the opposite chief of the Zoonomia Venture.

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Species with extra olfactory receptor genes additionally tended to have extra olfactory turbinals, bony buildings within the nasal cavity that assist olfaction. The outcomes recommend that “if sure traits are necessary, they evolve in a number of methods,” Dr. Lindblad-Toh mentioned.

She added, “I feel that one of many necessary issues with our information set is that it generates the genome sequencing for therefore many alternative species that folks can begin taking a look at their favourite traits.”

In February 1925, within the midst of a diphtheria outbreak, a relay of sled canine groups delivered an emergency provide of antitoxin to Nome, Alaska, which had been remoted by snow. Balto, one of many canine that ran the ultimate leg of the relay, turned well-known; when he died some years later, his taxidermied physique was placed on show on the Cleveland Museum of Pure Historical past.

A staff of Zoonomia researchers has now used a small piece of that taxidermied tissue to study extra in regards to the movie star sled canine and his canine contemporaries. “We noticed this as a bit of problem,” mentioned Kathleen Morrill, an writer of the Balto paper, who carried out the analysis as a graduate scholar at UMass Chan Medical Faculty and is now a senior scientist at Colossal Biosciences. “Right here is that this one particular person, actually famed. We don’t know so much about his biology. What can we are saying about his genome?”

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Balto, they discovered, was genetically “more healthy” than trendy purebred canine, with extra inherited genetic variation and fewer doubtlessly dangerous mutations. That discovering doubtless stems from the truth that sled canine are sometimes bred for bodily efficiency and could also be a mix of breeds.

Balto additionally had an assortment of genetic variants that weren’t current in wolves and have been uncommon or lacking in trendy purebred canine, the researchers discovered. Many variants have been in genes concerned in tissue growth and should have affected a wide range of traits necessary for sled canine, resembling pores and skin thickness and joint formation. Balto had two copies of those variants, one inherited from every mum or dad, which implies they have been in all probability not less than considerably widespread in different Alaskan sled canine on the time.

“We get this a lot clearer image of what he was like and what his inhabitants would have seemed like,” mentioned Katie Moon, a postdoctoral researcher on the College of California, Santa Cruz, and an writer of the paper. “And that image is of actually well-adapted working sled canine.”

Scientists have lengthy debated exactly how and when right this moment’s numerous assortment of mammals got here into being. Did the mammalian household tree department out solely after the extinction of the dinosaurs, some 66 million years in the past? Or did the method largely happen earlier than the disaster?

A brand new evaluation with the Zoonomia genomes means that the reply is each. Mammals first started to diversify about 102 million years in the past, when Earth’s continents have been fragmenting and sea ranges started rising. “This remoted the predecessors of the trendy lineages on totally different land plenty,” mentioned William Murphy, an evolutionary geneticist at Texas A&M College and an writer of the paper.

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However one other burst of diversification got here after the extinction of the dinosaurs, the researchers discovered, when the emergence of recent land and the disappearance of the reigning reptiles supplied mammals with new habitats, assets and alternatives.

“It’s a extremely landmark paper,” mentioned Scott Edwards, an evolutionary biologist at Harvard, who was not concerned within the analysis. “It’s in all probability the biggest of its sort when it comes to making an attempt to place mammals on a time scale.”

The Zoonomia bundle extra broadly is “a monumental set of labor,” he added. “It’s going to actually set the usual for our understanding of mammal evolution going ahead.”

Mammals typically inherit two copies of most genetic sequences, one from every mum or dad. Figuring out how carefully these sequences match can present perception into the dimensions of previous animal populations; lengthy stretches of matching DNA generally is a signal of inbreeding, as an example.

The genome of a single animal displays “how carefully associated its dad and mom have been, grandparents have been, going all the way in which again,” mentioned Aryn Wilder, a conservation geneticist on the San Diego Zoo Wildlife Alliance.

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Dr. Wilder and her colleagues used the Zoonomia genomes to estimate the inhabitants sizes of various species all through historical past. In contrast with species that have been traditionally ample, these with small previous populations had extra doubtlessly dangerous genetic mutations and have been extra more likely to be categorised as threatened by the Worldwide Union for Conservation of Nature.

The researchers additionally analyzed the genomes of three species whose danger of extinction the I.U.C.N. thought-about to be unknown due to a scarcity of information: the killer whale, the Higher Galilee Mountains blind mole rat and the Java mouse-deer (which seems precisely as marketed). The outcomes prompt that the killer whale is perhaps at highest danger.

The method may present a fast solution to prioritize species for extra thorough, resource-intensive danger assessments, mentioned Beth Shapiro, a paleogeneticist on the College of California, Santa Cruz, and an writer of the examine. “It might be a comparatively easy solution to do conservation triage,” she mentioned.

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Kennedy’s Plan for the Drug Crisis: A Network of ‘Healing Farms’

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Kennedy’s Plan for the Drug Crisis: A Network of ‘Healing Farms’

Though Mr. Kennedy’s embrace of recovery farms may be novel, the concept stretches back almost a century. In 1935, the government opened the United States Narcotic Farm in Lexington, Ky., to research and treat addiction. Over the years, residents included Chet Baker and William S. Burroughs (who portrayed the institution in his novel, “Junkie: Confessions of an Unredeemed Drug Addict”). The program had high relapse rates and was tainted by drug experiments on human subjects. By 1975, as local treatment centers began to proliferate around the country, the program closed.

In America, therapeutic communities for addiction treatment became popular in the 1960s and ’70s. Some, like Synanon, became notorious for cultlike, abusive environments. There are now perhaps 3,000 worldwide, researchers estimate, including one that Mr. Kennedy has also praised — San Patrignano, an Italian program whose centerpiece is a highly regarded bakery, staffed by residents.

“If we do go down the road of large government-funded therapeutic communities, I’d want to see some oversight to ensure they live up to modern standards,” said Dr. Sabet, who is now president of the Foundation for Drug Policy Solutions. “We should get rid of the false dichotomy, too, between these approaches and medications, since we know they can work together for some people.”

Should Mr. Kennedy be confirmed, his authority to establish healing farms would be uncertain. Building federal treatment farms in “depressed rural areas,” as he said in his documentary, presumably on public land, would hit political and legal roadblocks. Fully legalizing and taxing cannabis to pay for the farms would require congressional action.

In the concluding moments of the documentary, Mr. Kennedy invoked Carl Jung, the Swiss psychiatrist whose views on spirituality influenced Alcoholics Anonymous. Dr. Jung, he said, felt that “people who believed in God got better faster and that their recovery was more durable and enduring than people who didn’t.”

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Children exposed to higher fluoride levels found to have lower IQs, study reveals

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Children exposed to higher fluoride levels found to have lower IQs, study reveals

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The debate about the benefits and risks of fluoride is ongoing, as RFK Jr. — incoming President Trump’s pick for HHS secretary — pushes to remove it from the U.S. water supply.

“Fluoride is an industrial waste associated with arthritis, bone fractures, bone cancer, IQ loss, neurodevelopmental disorders and thyroid disease,” RFK wrote in a post on X in November.

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A new study published in JAMA Pediatrics on Jan. 6 found another correlation between fluoride exposure and children’s IQs.

RFK JR. CALLS FOR REMOVAL OF FLUORIDE FROM DRINKING WATER, SPARKING DEBATE

Study co-author Kyla Taylor, PhD, who is based in North Carolina, noted that fluoridated water has been used “for decades” to reduce dental cavities and improve oral health.

Fluoride exposure has been linked to a variety of negative health effects, yet benefits oral health. (iStock)

“However, there is concern that pregnant women and children are getting fluoride from many sources, including drinking water, water-added foods and beverages, teas, toothpaste, floss and mouthwash, and that their total fluoride exposure is too high and may affect fetal, infant and child neurodevelopment,” she told Fox News Digital.

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The new research, led by scientists at the National Institute of Environmental Health Sciences (NIEHS), analyzed 74 epidemiological studies on children’s IQ and fluoride exposure.

FEDERAL JUDGE ORDERS EPA FURTHER REGULATE FLUORIDE IN DRINKING WATER DUE TO CONCERNS OVER LOWERED IQ IN KIDS

The studies measured fluoride in drinking water and urine across 10 countries, including Canada, China, Denmark, India, Iran, Mexico, Pakistan, New Zealand, Spain and Taiwan. (None were conducted in the U.S.)

The meta-analysis found a “statistically significant association” between higher fluoride exposure and lower children’s IQ scores, according to Taylor.

“[It showed] that the more fluoride a child is exposed to, the more likely that child’s IQ will be lower than if they were not exposed,” she said.

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Little girl drinking water from a glass

Scientists found a “statistically significant association” between higher fluoride exposure and lower children’s IQ scores. (iStock)

These results were consistent with six previous meta-analyses, all of which reported the same “statistically significant inverse associations” between fluoride exposure and children’s IQs, Taylor emphasized.

The research found that for every 1mg/L increase in urinary fluoride, there was a 1.63-point decrease in IQ. 

‘Safe’ exposure levels

The World Health Organization (WHO) has established 1.5mg/L as the “upper safe limit” of fluoride in drinking water.

“There is concern that pregnant women and children are getting fluoride from many sources.”

Meanwhile, the U.S. Public Health Service recommends a fluoride concentration of 0.7 mg/L in drinking water.

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“There was not enough data to determine if 0.7 mg/L of fluoride exposure in drinking water affected children’s IQs,” Taylor noted.

FDA BANS RED FOOD DYE DUE TO POTENTIAL CANCER RISK

Higher levels of the chemical can be found in wells and community water serving nearly three million people in the U.S., the researcher noted.

She encouraged pregnant women and parents of small children to be mindful of their total fluoride intake.

little boy filling fresh water from water tap in sports bottle

Nearly three million people have access to wells and community water with fluoride levels above the levels suggested by the World Health Organization. (iStock)

“If their water is fluoridated, they may wish to replace tap water with low-fluoride bottled water, like purified water, and limit exposure from other sources, such as dental products or black tea,” she said.

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“Parents can use low-fluoride bottled water to mix with powdered infant formula and limit use of fluoridated toothpaste by young children.”

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While the research did not intend to address broader public health implications of water fluoridation in the U.S., Taylor suggested that the findings could help inform future research into the impact of fluoride on children’s health.

Dental health expert shares cautions

In response to this study and other previous research, Dr. Ellie Phillips, DDS, an oral health educator based in Austin, Texas, told Fox News Digital that she does not support water fluoridation.

Mother and her toddler drinking a glass with water from the tap

The study researcher encouraged parents of small children to be mindful of their total fluoride intake. (iStock)

“I join those who vehemently oppose public water fluoridation, and I question why our water supplies are still fluoridated in the 21st century,” she wrote in an email.

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“There are non-fluoridated cities and countries where the public enjoy high levels of oral health, which in some cases appear better than those that are fluoridated.”

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Phillips called the fluoride debate “confusing” even among dentists, as the American Dental Association (ADA) advocates for fluoride use for cavity prevention through water fluoridation, toothpaste and mouthwash — “sometimes in high concentrations.”

mother checks son's brushed teeth

Fluoride is used in water, toothpaste and mouthwash to help prevent cavities. (iStock)

“[But] biologic (holistic) dentists generally encourage their patients to fear fluoride and avoid its use entirely, even if their teeth are ravaged by tooth decay,” she said.

“Topical fluoride is beneficial, while systemic consumption poses risks.”

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Phillips encouraged the public to consider varying fluoride compounds, the effect of different concentrations and the “extreme difference” between applying fluoride topically and ingesting it.

“Topical fluoride is beneficial, while systemic consumption poses risks,” she cautioned. 

“Individuals must take charge of their own oral health using natural and informed strategies.”

The study received funding from the National Institute of Environmental Health Sciences (NIEHS), the National Institutes of Health (NIH) and the Intramural Research Program.

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Treating Other Diseases With Ozempic? Experts Weigh In | Woman's World

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Treating Other Diseases With Ozempic? Experts Weigh In | Woman's World


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Treating Other Diseases With Ozempic? Experts Weigh In | Woman’s World




























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