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A beloved New England chain restaurant’s last Boston location may close as developers eye the lot around it for future apartments at Charlestown’s Bunker Hill Mall. 

Universal Hub first reported the news that the 99 Restaurant on Austin Street could shutter as part of a proposal to replace much of the site with a six-story, 240-unit apartment complex. 

A spokesperson for the restaurant said the 99 has been at its 31 Austin St. location for 33 years.

“We are aware that the owners of Bunker Hill Mall property are considering a redevelopment of the entire site, and as such, we are exploring our options to remain in this community far into the future,” a spokesperson said. “We will continue to serve our loyal guests in our current location as long as our lease remains in place.”

The property owner, New England Development, originally proposed a plan in 2021 that would build apartments around the 99 in a U-shape design, according to previous documents and members of the Charlestown Neighborhood Council who spoke to Boston.com. But the neighborhood council development chair Nancy Johnson said the community had a hard time envisioning that design.

Since then, a key zoning change has reshaped the project. In late 2023, the Boston Planning Department changed the Bunker Hill Mall site’s zoning from neighborhood shopping to mixed-use, clearing the way for residential builds. New England Development now proposes replacing the 99 entirely, with construction to be finished by 2028.

In a statement, New England Development said the restaurant “will remain in operation through at least the end of 2026.”

“The residential development, which adheres to zoning, will provide needed housing, and also complement and support the existing grocery and commercial uses with no reduction in parking for those businesses,” the statement read.

In a March meeting, some public comments opposed the project because of the likely shuttering of the 99. 

“The 99 is one of the few family-friendly restaurants in Charlestown,” said one commenter. “We have celebrated numerous end-of-season sports events there. We need these kind of community spaces in Charlestown.”

Residents also raised broader concerns about the development, including parking and the potential loss of retail in addition to the 99. It isn’t immediately clear which stores will stay. A draft project impact report filed this year indicates redevelopment would only be considered after the “expiration of long-term retail leases.”

But along with zoning changes, Boston’s planning department approved a modification to the urban renewal plan to allow for the residential build. Johnson said the community is worried it could mean less retail stores at the site, which is the opposite of what the community wants. 

The Bunker Hill Mall currently includes a Whole Foods, CVS, an Ace Hardware, and other stores. The 99 and a Dunkin’ are the last remaining restaurant spaces on site — the 99 being the last full-service option. The mall previously housed a Papa Gino’s and a Friendly’s.

The Charlestown Neighborhood Council expressed frustration mostly with the Boston Planning & Development Agency over the lack of a community process during the 2023 zoning change and a subsequent update to the site’s urban renewal plan. 

“We want our neighbors and other residents to have good, affordable housing that’s safe and well-made,” Johnson said. “But you have to plan for the future, and a neighborhood is going to need retail spaces.” 

The 99’s long history in Charlestown includes a 1995 shooting that killed four people. More recently, the chain has maintained a loyal following: It topped a Boston.com reader poll in 2020 and drew a wave of praise from readers in 2024 reacting to a Reddit post declaring the chain was underrated.

If the Charlestown location ultimately closes at the Bunker Hill Mall site, the closest 99 locations to Boston proper would be in Revere and Quincy.

Katelyn Umholtz

Food and Restaurant Reporter

Katelyn Umholtz covers food and restaurants for Boston.com. Katelyn is also the author of The Dish, a weekly food newsletter.